COMPUTATIONAL BIOLOGY DEPARTMENT
School of Computer Science, Carnegie Mellon University
Pittsburgh PA 15213-3891
412.268.2474 . 412.268.2977 (fax)


Technical Reports by Author
Theses by Author


2016 REPORT SERIES


CMU-CB-16-101
Unavailable to Date

CMU-CB-16-101
Modeling the Part, Present, and Future of Influenza
David Farrow, Ph.D. Thesis
Abstract, .pdf

CMU-CB-16-102
Computational methods for exploring gene regulation mechanisms using high-throughput sequencing data
Hao Wang, Ph.D. Thesis
Abstract, .pdf




2015 REPORT SERIES


CMU-CB-15-100
Algorithms for Identifying Compact Regions of Chromatin and their Relationship to Gene Regulation
Geet Duggal, Ph.D. Thesis
Abstract, .pdf

CMU-CB-15-101
Algorithms to Reconstruct Evolutionary Models of Tumor Progression
Salim Akhter Chowdhury, Ph.D. Thesis
Abstract, .pdf

CMU-CB-15-102
Image-derived generative modeling of complex cellular organization in both space and time
Devin P. Sullivan, Ph.D. Thesis
Abstract, .pdf

CMU-CB-15-103
Inferring and Analyzing the Present and the Past of Networks from Limited Information
Emre Sefer, Ph.D. Thesis
Abstract, .pdf

CMU-CB-15-104
Comparative Genomics Reveals Forces Driving the Evolution of Highly Iterated Palindrome-1 (HIP1) in Cyanobacteria
Minli Xu, Ph.D. Thesis
Abstract, .pdf

CMU-CB-15-105
Inferring Viral Capsid Self-Assembly Pathway from Bulk Experiment Measurement via Parameter Fitting Methods
Lu Xie, Ph.D. Thesis
Abstract, .pdf




Technical Reports by Author
Theses by Author


2014 REPORT SERIES (See also Lane Center for Computational Biology)


CMU-CB-14-100
Quantitative Simulation of Synaptic Vesicle Release at the Neuormuscular Junction
Jun Ma, Ph.D. Thesis
Abstract, .pdf

CMU-CB-14-101
Phenotype Inference from Genotype in RNA Viruses
Chuang Wu, Ph.D. Thesis
Abstract, .pdf


2013 REPORT SERIES


CMU-CB-13-100
Active Learning for Drug Discovery
Joshua Kangas, Ph.D. Thesis
Abstract, .pdf

CMU-CB-13-101
Computational Study of Transcriptional Regulation
- From Sequence to Expression

Shan Zhong, Ph.D. Thesis
Abstract, .pdf

CMU-CB-13-102
Computational Methods for Learning Population History from Large Scale Genetic Variation Datasets
Ming-Chi Tsai, Ph.D. Thesis
Abstract, .pdf

CMU-CB-13-103
Spatiotemporal Modeling of Actin Cytoskeletal Mechanics Linked to Morphology and Mechanotransduction
John Kang, Ph.D. Thesis
Abstract, .pdf

CMU-CB-13-104
Efficient Modeling and Active Learning of Biological Responses: Learning without Prior Knowledge
Armaghan Naik, Ph.D. Thesis
Currently Unavailable

CMU-CB-13-105
Automated Construction of Dynamic Models of Subcellular Structure
Taráz E. Buck, Ph.D. Thesis
Abstract, .pdf

2012 REPORT SERIES


CMU-CB-12-100
miRNA Regulation in Development
Sabah Kadri, Ph.D. Thesis
Abstract, .pdf

CMU-CB-12-101
Learning Generative Models of Microtubule Distributions
Aabid Shariff, Ph.D. Thesis
Abstract, .pdf


CMU-CB-12-102
Analysis of High Throughput Genomic Datasets Across Species
Guy E. Zinman, Ph.D. Thesis
Abstract, .pdf


CMU-CB-12-103
On the Identification and Investigation of Homologous Gene Families,
with Particular Emphasis on the Accuracy of Multidomain Families

Jacob M. Joseph, Ph.D. Thesis
Abstract, .pdf


CMU-CB-12-104
Generative Models for Super-Resolution Single Molecule
Microscopy Images of Biological Structures

Suvrajit Maji, Ph.D. Thesis
Abstract, .pdf


2011 REPORT SERIES


CMU-CB-11-100
The von Mises Graphical Model: Structure Learning
Narges Razavian, Hetunandan Kamisetty, Christopher James Langmead
Abstract, .pdf
Also appears as CMU-CS-11-108

CMU-CB-11-101
The von Mises Graphical Model: Regularized Structure and Parameter Learning
Narges Razavian, Hetunandan Kamisetty, Christopher James Langmead
Abstract, .pdf
Also appears as CMU-CS-11-129

CMU-CB-11-102
The von Mises Graphical Model: Expectation Propagation for Inference
Narges Razavian, Hetunandan Kamisetty, Christopher James Langmead
Abstract, .pdf
Also appears as CMU-CS-11-130

CMU-CB-11-103
Using Visualization and Automation to Accelerate Genetics Discovery
Ross Eugene Curtis, Ph.D. Thesis
Abstract, .pdf

CMU-CB-11-104
Modeling the Space of Subcellular Location Patterns using Images and
other Sources of Information

Luis Pedro Coelho, Ph.D. Thesis
Abstract, .pdf


2010 REPORT SERIES


CMU-CB-10-100
Stochastic Off-Lattice Simulations of Binding Chemistry in Crowded Conditions
Byoungkoo Lee, Ph.D. Thesis
Abstract
Currently Unavailable

CMU-CB-10-101
A Framework for Inferring Protein Location as a Function of Condition
Shannon Quinn, M.S. Thesis
Abstract, .pdf

CMU-CB-10-102
Internal Dynamics and Energetics during Enzyme Catalysis
Arvind Ramanathan, Ph.D. Thesis
Abstract, .pdf


2009 REPORT SERIES


CMU-CB-09-101
Structured Literature Image Finder: Open Source Software for Extracting and
Disseminating Information from Text and Figures in Biomedical Literature

Abdul-Saboor Sheikh, Amr Ahmed, Andrew Arnold, Luis Pedro Coelho,
Joshua Kangas, Eric P. Xing, William Cohen, Robert F. Murphy
Abstract, .pdf




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