LANE CENTER FOR COMPUTATIONAL BIOLOGY
School of Computer Science, Carnegie Mellon University
Pittsburgh PA 15213-3891
412.268.2474 . 412.268.2977 (fax)


Technical Reports by Author
Theses by Author


2013 REPORT SERIES


CMU-CB-13-100
Active Learning for Drug Discovery
Joshua Kangas, Ph.D. Thesis
Currently Unavailable

- CMU-CB-13-101
Computational Study of Transcriptional Regulation
- From Sequence to Expression

Shan Zhong, Ph.D. Thesis
Abstract, .pdf


CMU-CB-13-102
Computational Methods for Learning Population History from Large Scale Genetic Variation Datasets
Ming-Chi Tsai, Ph.D. Thesis
Abstract, .pdf


CMU-CB-13-103
Spatiotemporal Modeling of Actin Cytoskeletal Mechanics Linked to Morphology and Mechanotransduction
John Kang, Ph.D. Thesis
Abstract, .pdf


CMU-CB-13-104
Efficient Modeling and Active Learning of Biological Responses: Learning without Prior Knowledge
Armaghan Naik, Ph.D. Thesis
Currently Unavailable

CMU-CB-13-105
Automated Construction of Dynamic Models of Subcellular Structure
Taráz E. Buck, Ph.D. Thesis
Abstract, .pdf


2012 REPORT SERIES


CMU-CB-12-100
miRNA Regulation in Development
Sabah Kadri, Ph.D. Thesis
Abstract, .pdf

CMU-CB-12-101
Learning Generative Models of Microtubule Distributions
Aabid Shariff, Ph.D. Thesis
Abstract, .pdf


CMU-CB-12-102
Analysis of High Throughput Genomic Datasets Across Species
Guy E. Zinman, Ph.D. Thesis
Abstract, .pdf


CMU-CB-12-103
On the Identification and Investigation of Homologous Gene Families,
with Particular Emphasis on the Accuracy of Multidomain Families

Jacob M. Joseph, Ph.D. Thesis
Abstract, .pdf


CMU-CB-12-104
Generative Models for Super-Resolution Single Molecule
Microscopy Images of Biological Structures

Suvrajit Maji, Ph.D. Thesis
Abstract, .pdf


2011 REPORT SERIES


CMU-CB-11-100
The von Mises Graphical Model: Structure Learning
Narges Razavian, Hetunandan Kamisetty, Christopher James Langmead
Abstract, .pdf
Also appears as CMU-CS-11-108

CMU-CB-11-101
The von Mises Graphical Model: Regularized Structure and Parameter Learning
Narges Razavian, Hetunandan Kamisetty, Christopher James Langmead
Abstract, .pdf
Also appears as CMU-CS-11-129

CMU-CB-11-102
The von Mises Graphical Model: Expectation Propagation for Inference
Narges Razavian, Hetunandan Kamisetty, Christopher James Langmead
Abstract, .pdf
Also appears as CMU-CS-11-130

CMU-CB-11-103
Using Visualization and Automation to Accelerate Genetics Discovery
Ross Eugene Curtis, Ph.D. Thesis
Abstract, .pdf

CMU-CB-11-104
Modeling the Space of Subcellular Location Patterns using Images and
other Sources of Information

Luis Pedro Coelho, Ph.D. Thesis
Abstract, .pdf


2010 REPORT SERIES


CMU-CB-10-100
Stochastic Off-Lattice Simulations of Binding Chemistry in Crowded Conditions
Byoungkoo Lee, Ph.D. Thesis
Abstract
Currently Unavailable

CMU-CB-10-101
A Framework for Inferring Protein Location as a Function of Condition
Shannon Quinn, M.S. Thesis
Abstract, .pdf

CMU-CB-10-102
Internal Dynamics and Energetics during Enzyme Catalysis
Arvind Ramanathan, Ph.D. Thesis
Abstract, .pdf


2009 REPORT SERIES


CMU-CB-09-101
Structured Literature Image Finder: Open Source Software for Extracting and
Disseminating Information from Text and Figures in Biomedical Literature

Abdul-Saboor Sheikh, Amr Ahmed, Andrew Arnold, Luis Pedro Coelho,
Joshua Kangas, Eric P. Xing, William Cohen, Robert F. Murphy
Abstract, .pdf




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